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How to Correct Payroll Tax Liabilities in QuickBooks

I have a question for you I hope you can help me answer, we have been using QuickBooks for 10 years and always just pulled up tax liability and sent a check. We are finally getting our QuickBooks running correctly but my tax liability shows 66,000 dollars owed but we have always paid I need to clear that out so I can do correctly. Starting this year we are doing it the way it shows by going to pay tax liability and showing amount and listing check but I still show all this old that is already paid I need to zero it out. Any help greatly appreciated.

You can adjust your payroll liabilities at Employees > Payroll Taxes & Liabilities > Adjust Payroll Liabilities. If you Balance Sheet and Profit & Loss reports are correct, select the Accounts Affected button and change it to Do not affect accounts. If the reports are not correct, leave it set at Affect liability and expense accounts.

When you pay payroll liabilities with a regular check, your reports are usually correct so you don’t want to affect accounts with the adjustment. You just want to remove the liabilities you paid incorrectly. Make sure to pay your payroll liabilities through Employees > Payroll Taxes & Liabilities > Pay Scheduled Liabilities in the future.


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This article is provided for informational purposes and is not intended to be construed as legal, accounting, or other professional advice. For further information, please consult appropriate professional advice from your attorney and certified public accountant.

Ruth Perryman - QuickBooks Specialist Written by +Ruth Perryman, CMA, CFE, CFM, MBA

Ruth is the president of The QB Specialists, an Intuit Premier Reseller that offers huge savings and expert advice on QuickBooks POS and QuickBooks Enterprise. She is an Advanced Certified QuickBooks ProAdvisor and a member of Intuit’s Trainer/Writer Network. She is also certified in QuickBooks POS and QuickBooks Enterprise and has provided expert QuickBooks help to thousands of businesses all over the world since 1996.

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16 Responses to How to Correct Payroll Tax Liabilities in QuickBooks

  • Bob says:

    We use 2013 QB Pro-the quarterly FL UC tax liability payable shows an amount different from the correct one each quarter and we don’t know why?

    • Hi Bob,

      Unfortunately, there are all sorts of reasons your tax liability payable is incorrect. I’d start by double-clicking on the amount on the balance sheet and review the detailed report to see what’s increasing and decreasing the payable amount.

  • Katie says:

    Hi Ruth,
    We have a credit balance that has been carried over and over in our Tax liability report. for that reason, we have experience many trouble while trying to balance our book and even in bank reconciliation process. Would you please shoe me how to resolve our problem. Thank you very much!

    • Hi Katie,

      You can adjust your payroll liabilities in Employees > Payroll Taxes and Liabilities > Adjust Payroll Liabilities. But if you’re having trouble reconciling your bank accounts this is just one symptom of a bigger problem.

      First, you need to figure out why you can’t reconcile and fix the errors. It probably has nothing to do with the credit balance, unless the credit balance was created by entering an incorrect payment amount.

      Once you reconcile all your accounts you can safely adjust your payroll liabilities.

      Ruth

  • sharon schreiner says:

    Please help, my payroll liabilities show overdue payments for each quarter of 2012…for Tx-unemployment tax…which is figured by a % that was input in error quite awhile back…this tax was also paid online by electronic draft and posted to the register after the fact…the amounts of the “overdue” liability payments are wrong (way over what was owed and paid). So I can’t just void or delete the previous transactions on the check register and re-do the transaction thru the payroll liabilities some how I need to lower the amount due of the liability…I have corrected the % for 2013 un-employment tax due so future payments should be correct.

  • Phillip says:

    We have a not for profit it organization which is tax exempt from FUTA and SUTA. However when setting up one employee I forgot to check the exemt box under FUI. On the paycheck the paycheck is correct for the employee how ever on the employer side it shows like $3.00 that we owe to FUTA. When I go to payroll liabilities I see the $3.00 which is due but technically we do not owe them. I am not sure how to remove this from the payroll liabilities?
    Thank You

  • Hi Ruth, I want to make sure we are talking about the same thing before I proceed.

    In my payroll liabilities there are amounts in red from previous quarters where the Payroll Liabilities and the amount that quickbooks says to pay doesn’t jive (or the amount my accountant calculates is different). This has left me with small balances that I can’t get rid of.

    Our P/L etc. are all correct, what should I do to clear out these balances?

    • Hi Anthony,

      Go to Employees > Payroll Liabilities & Taxes > Adjust Payroll Liabilities. If your P&L and Balance Sheet are correct, select the Accounts Affected button and check the box next to “Do not affect accounts”.

      Ruth

  • Mesha says:

    Hi Ruth,

    I have a question about payroll liability payments made in my quickbooks. I VOID my liabiltiy payment for $3,228.32 and forgot to cancel the schedule payment for that amount.

    Now I have 2 liabilities payment that was deducted to my bank which was the one that I VOIDED in my quickbooks and the Updated one.

    If you can help me with this question I would really appreciate that.

    Sincerely,
    Mesha

    • Hi Mesha,

      Unfortunately, voiding a payroll liability payment in QuickBooks only affects QuickBooks. If you’re going to apply the overpayment to a future tax liability, you should re-enter the voided liability check. This will create a negative balance which will reduce your future tax liability.

      Ruth

  • Kathryn says:

    Hi there,

    We have three payroll liability checks that we voided in QuickBooks as they were in error. The correct checks have since gone out, but these three payroll liability checks now show as overdue. Is there any way to remove these from the payroll liabilities due list?

    Thanks,
    Kathryn

    • Hi Kathryn,

      The replacement checks should’ve been issued as payroll liability checks as well (Employees > Payroll Taxes & Liabilities > Pay Scheduled Liabilities).

      If regular checks were issued, you can adjust your payroll liabilities (Employees > Payroll Taxes & Liabilities > Adjust Payroll Liabilities). If you used the correct account on the check and you don’t want to affect your accounts, make sure to select the Accounts Affected button and change it to “Do not affect accounts”.

      Ruth

  • Brian Weishaar says:

    I entered the wrong amount for the company Social Security on my payroll liability check. I tried to correct by going to EMPLOYEE>PAY PAYROLL LIABILITIES, and the amount have been moved over when I created the check. I also went to the actual payroll liability check and tried to change the company Social Security to the correct amount, and this will not work.

    Please give me some advise on how to correct my problem. Thanks, Brian

    • Hi Brian,

      Either void or delete the liability check and then re-enter it. Open the check and then go to the Edit drop-down menu to find both options.

      Ruth

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